Portrai ExplorerSpatial Transcriptomics Visualization Platform

Explore and analyze your spatial transcriptomics data with powerful interactive tools

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Spatial Visualization

View tissue images with data points, zoom and pan seamlessly, switch between spatial and embedding projections

🎨

Color-code your data by any feature - cell types, gene expression, or custom signatures

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Build complex subset queries with AND/OR logic, lasso and brush selections, and saved subsets

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A plot dashboard of scatter, violin, bar, stacked bar, dot and box plots, with lasso selection on scatter plots

Section	Pages
Getting Started	Introduction, Interface Overview, Quick Start
Explorer	Map Viewer, Facet View, Features, Import Metadata, Column Notes, Signatures, Navigation
Subsetting	Subset, Lasso Selection, Brush Selection, Saved Subsets
Visualization	Color Mapping, Layer Settings, Image Adjustments, Plot Dashboard, Scatter Plot, Violin Plot, Bar & Stacked Bar, Dot Plot, Box Plot
Analysis	InSilicoLab Features, DEG Analysis
Data Export	CSV Export, Image Export
Settings	Preferences
Tutorials	Basic Exploration, Analysis Workflow, Group Comparison
Reference	Glossary, FAQ